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S
STR
Commit 35460f6a authored by Anne-Sophie Denommé-Pichon's avatar Anne-Sophie Denommé-Pichon
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Fix Markdown

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README.md
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...@@ -6,20 +6,15 @@ ...@@ -6,20 +6,15 @@
- Licence: FIXME - Licence: FIXME
- Description: How to launch scripts to get STR genotype from genomes on all the locus tested - Description: How to launch scripts to get STR genotype from genomes on all the locus tested
1. Create genomes.list 1. Create `genomes.list`
2. Specify output file in launch_pipeline.sh 2. Specify output file in `launch_pipeline.sh`. Warning, don't overwrite existing files
Warning, don't overwrite existing files 3. Launch launch_pipeline.sh : `nohup ./launch_pipeline.sh &`. Dependencies :
3. Launch launch_pipeline.sh - `genomes.list`
- `pipeline.sh`
`nohup ./launch_pipeline.sh &` - `wrapper_delete.sh`
- `wrapper_ehdn.sh`
Dependencies : - `wrapper_expansionhunter.sh`
- genomes.list - `wrapper_gangstre.sh`
- pipeline.sh - `wrapper_transfer.sh`
- wrapper_delete.sh - `wrapper_tredparse.sh`
- wrapper_ehdn.sh 4. Launch `getResults.py`
- wrapper_expansionhunter.sh \ No newline at end of file
- wrapper_gangstre.sh
- wrapper_transfer.sh
- wrapper_tredparse.sh
4. Launch getResults.py
\ No newline at end of file
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